Journals

1. L. Alagialoglou, I. Manakos, E. Katsikis, S. Medinets, Y. Gazyetov, V. Medinets, A. Delopoulos, "Machine Learning for Identifying Emergent and Floating Aquatic Vegetation from Space: A Case Study in the Dniester Delta, Ukraine", Springer Nature Computer Science Journal, 2024, DOI: 10.1007/s42979-024-02873-7 https://link.springer.com/article/10.1007/s42979-024-02873-7
2. F. Lokmen, I. Manakos, G. Sylaios, C. Kalaitzidis, "A modified version of the Direct Sampling method for filling gaps in Landsat 7 and Sentinel 2 satellite imagery in the coastal area of Rhone River.", Remote Sensing (accepted). 2023. DOI: doi.org/10.3390/rs15215122
3. L. Alagialoglou, I. Manakos, S. Papadopoulou, R. Chadoulis, A. Kita, "Mapping underwater aquatic vegetation using foundation models with air- and space-borne images: the case of Polyphytos Lake.", Remote Sensing, Special Issue: Remote Sensing and Artificial Intelligence in Inland Waters. 2023. DOI: 10.3390/rs15164001
4. A. Kita, I. Manakos, S. Papadopoulou, I. Lioumbas, L. Alagialoglou, M. Katsiapi, A. Christodoulou, "Land–Water Transition Zone Monitoring in Support of Drinking Water Production.", Water MDPI. 2023. DOI: 10.3390/w15142596
5. M. Milczarek, S. Aleksandrowicz, A. Kita, R. Chadoulis, I. Manakos, E. Woźniak, "Object- Versus Pixel-Based Unsupervised Fire Burn Scar Mapping under Different Biogeographical Conditions in Europe.", Multidisciplinary Digital Publishing Institute - Land, 12(5), 1087. 2023. DOI: 10.3390/land12051087
6. M. Sismanis, R. Chadoulis, I. Manakos, A. Drosou, "An Unsupervised Burned Area Mapping Approach Using Sentinel-2 Images", 2023, Land, 12(2), 379; DOI: 10.3390/land12020379
7. R. Lucas, S. German, G. Metternicht, R. Schmidt, C. Owers, S. Prober, A. Richards, S. Tetreault-Campbell, K. Williams, N. Mueller, B. Tissott, S. Chua, A. Cowood, T. Hills, D. Gunawardana, A. McIntyre, S. Chognard, C. Hurford, C. Planque, S. Punalekar, D. Clewley, R. Sonnenschein, N. Murray, I. Manakos, P. Blonda, K. Owers, S. Roxburgh, H. Kay, P. Bunting, C. Horton, "A globally relevant change taxonomy and evidence-based change framework for land monitoring", 2022, Global Change Biology, 00, 1–25. https://onlinelibrary.wiley.com/doi/10.1111/gcb.16346
8. L. Alagialoglou, I. Manakos, M. Heurich, J. Cervenka, A. Delopoulos, "Alearnable model with calibrated uncertainty quantification for estimatingcanopy height from spaceborne sequential imagery", 2022, IEEE Transactions on Geoscience and Remote Sensing, DOI: 10.1109/TGRS.2022.3171407
9. C. Kalaitzidis, I. Manakos, C. Jurgens, P. Wezyk, "Introduction to the special issue: Earth observation supporting sustainability research", European Journal of Remote Sensing, 2020, doi: https://doi.org/10.1080/22797254.2020.1784677
10. L. Filchev, I. Manakos, R. Reuter, G. Mardirossian, T. Srebrova, L. Kraleva, D. Dimitrov, K. Marini, A. Rienow, "A Review of Earth Observation Resources for Secondary School Education - Part II", Aerospace Research in Bulgaria, 2021, doi: https://doi.org/10.3897/arb.v33.e18
11. L. Filchev, I. Manakos, R. Reuter, G. Mardirossian, T. Srebrova, L. Kraleva, D. Dimitrov, K. Marini, A. Rienow, "A Review of Earth Observation Resources for Secondary School Education - Part I", Aerospace Research in Bulgaria, 2020, doi: https://doi.org/10.3897/arb.v32.e18
12. I. Manakos, G. Gutman, C. Kalaitzidis, "Monitoring Land Cover Change: Towards Sustainability",2021, Multidisciplinary Digital Publishing Institute - Land, DOI: https://doi.org/10.3390/land10121356
13. C. Boutsoukis, I. Manakos, M. Heurich, A. Delopoulos, "Canopy height estimation from single multispectral 2D airborne imagery using texture analysis and machine learning in structurally rich temperate forests", 2019, Remote Sensing, 11(23), 2853, DOI: https://doi.org/10.3390/rs11232853
14. G. Kordelas, I. Manakos, G. Lefebvre, B. Poulin, "Automatic Inundation Mapping Using Sentinel-2 Data Applicable to Both Camargue and Donana Biosphere Reserves", 2019, Remote Sensing, 11, 2251, DOI: 10.3390/rs11192251
15. I. Manakos, G. Kordelas, K. Marini, "Fusion of Sentinel-1 data with Sentinel-2 products to overcome non-favourable atmospheric conditions for the delineation of inundation maps", 2019, European Journal of Remote Sensing, DOI: 10.1080/22797254.2019.1596757
16. I. Manakos, M. Tomaszewska, I. Gkinis, O. Brovkina, L. Filchev, L. Genc, I. Gitas, A. Halabuk, M. Inalpulat, A. Irimescu, G. Jelev, K. Karantzalos, T. Katagis, L. Kupkova, M. Lavreniuk, M. Mesaros, D. Mihailescu, M. Nita, T. Rusnak, P. Stych, F. Zemek, J. Albrechtova, P. Campbell, "Comparison of Global and Continental Land Cover Products for selected study areas in South Central and Eastern European Region", 2018, Remote Sensing, 10(12), 1967, DOI: https://doi.org/10.3390/rs10121967
17. G. Kordelas, I. Manakos, D. Aragones, R. Diaz-Delgado, J. Bustamante, "Fast and automatic data-driven thresholding for inundation mapping with Sentinel-2 data", 2018, Remote Sensing, 10, 910, DOI: 10.3390/rs10060910
18. D. Pasetto, S. Arenas-Castro, J. Bustamante, R. Casagrandi, N. Chrysoulakis, A. Cord, A. Dittrich, C. Domingo, G. El Serafy, A. Karnieli, G. Kordelas, I. Manakos, L. Mari, A. Monteiro, E. Palazzi, D. Poursanidis, A. Rinaldo, S. Terzago, A. Ziemba, G. Ziv, "Integration of satellite remote sensing data in ecosystem modelling at local scales: practices and trends",Methods in Ecology and Evolution, 2018; 9:1810–1821, DOI: 10.1111/2041-210X.13018.
19. I. Manakos, K. Chatzopoulos-Vouzoglanis, I. Gkinis, Z. Petrou, E. Stylianidis, G. Pozoukidou, "Assessing urban development trends in representative Local Administrative Units before and after the Greek economic crisis", 2017, Remote Sensing Applications: Society and Environment, 7, 49-56, DOI: 10.1016/j.rsase.2017.06.004
20. I. Manakos, C. Karakizi, I. Gkinis, K. Karantzalos, "Validation and Inter-Comparison of Spaceborne Derived Global and Continental Land Cover Products for the Mediterranean Region: The Case of Thessaly", 2017, Land, 6(2), 34, DOI: 10.3390/land6020034.
21. I. Manakos, E. Technitou, Z. Petrou, C. Karydas, V. Tomaselli, G. Veronico, G. Mountrakis, "Multi-modal knowledge base generation from very high resolution satellite imagery for habitat mapping",2016, European Journal of Remote Sensing, 49, 1033-1060, DOI: 10.5721/EuJRS20164953.
22. A. Endres, G. Mountrakis, H. Jin, W. Zhuang, I. Manakos, J.J. Wiley Jr, C.M. Beier, "Relative importance analysis of Landsat, waveform LIDAR and PALSAR inputs for deciduous biomass estimation",2016, European Journal of Remote Sensing, 49, 795-807, DOI: 10.5721/EuJRS20164942
23. D. Koureas, A. Hardisty, R. Vos, D. Agosti, C. Arvanitidis, P. Bogatencov, P. Buttigieg, Y. de Jong, F. Horvath, G. Gkoutos, Q. Groom, T. Kliment, U. Kõljalg, I. Manakos, A. Marcer, K. Marhold, D. Morse, P. Mergen, L. Penev, L. Pettersson, J. Svenning, A. van de Putte, V. Smith, "Unifying European Biodiversity Informatics (BioUnify)", , 2016, Research Ideas and Outcomes 2: e7787, doi: 10.3897/rio.2.e7787
24. C. A. Mücher, L. Roupioz, H. Kramer, M. M. B. Bogers, R. H. G. Jongman, R. M. Lucas, V. Kosmidou, Z. Petrou, I. Manakos, E. Padoa-Schioppa, M. Adamo, P. Blonda., "Synergy of Airborne LiDAR and Worldview-2 satellite imagery for land cover and habitat mapping: a BIOSOS-EODHAM case study for the Netherlands", 2015, International Journal of Applied Earth Observation and Geoinformation 37, 48–55.
25. Z. Petrou, I. Manakos, T. Stathaki, "Remote sensing for biodiversity monitoring: A review of methods for biodiversity indicator extraction and assessment of progress towards international targets", 2015, Biodiversity and Conservation, 24(10), 2333-2363.
26. Z. Petrou, I. Manakos, T. Stathaki, C. A. Mücher, M. Adamo, "Discrimination of vegetation height categories with passive satellite sensor imagery using texture analysis", 2015, IEEE Journal of Selected Topics in Applied Earth Observation and Remote Sensing, 8(4), 1442–1455.
27. I. Manakos, K. Chatzopoulos-Vouzoglanis, Z. Petrou, L. Filchev, A. Apostolakis, "Globalland30 Mapping Capacity of Land Surface Water in Thessaly, Greece", 2015, Land 4(1), 1-18.
28. R. Lucas, P. Blonda, P. Bunting, G. Jones, J. Inglada, M. Arias, V. Kosmidou, Z. Petrou, I. Manakos, M. Adamo, R. Charnock, C. Tarantino, C. A. Mücher, R. Jongman, H. Kramer, D. Arvor, J. P. Honrado, P. Mairota, "The Earth Observation Data for Habitat Monitoring (EODHAM) System", 2015, International Journal of Applied Earth Observation and Geoinformation 37, 17–28.
29. H. Nagendra, P. Mairota, C. Marangi, R. Lucas, P. Dimopoulos, J. P. Honrado, M. Niphadkar, C. A. Mücher, V. Tomaselli, M. Panitsa, C. Tarantino, I. Manakos, P. Blonda, "Satellite Earth observation data to identify anthropogenic pressures in selected protected areas", 2015, International Journal of Applied Earth Observation and Geoinformation 37, 124-132.
30. Z. Petrou, V. Kosmidou, I. Manakos, T. Stathaki, M. Adamo, C. Tarantino, V. Tomaselli, P. Blonda, M. Petrou, "A rule-based classification methodology to handle uncertainty in habitat mapping employing evidential reasoning and fuzzy logic", 2014, Pattern Recognition Letters, 48, 24-33.
31. M. Adamo, C. Tarantino, V. Tomaselli, V. Kosmidou, Z. Petrou, I. Manakos, R.M. Lucas, C.A. Mucher, G. Veronico, C. Marangi, V. De Pasquale, P. Blonda, "Expert knowledge for translating land cover/use maps to General Habitat Categories (GHC)", 2014, Landscape Ecol., 29(6), 1045-1067.
32. V. Kosmidou, Z. Petrou, R.G.H. Bunce, C.A. Mucher, R.H.G. Jongman, M.M. Bogers, R.M. Lucas, V. Tomaselli, P. Blonda, E. Padoa-Schioppa, I. Manakos, M. Petrou, "Harmonization of the Land Cover Classification System (LCCS) with the General Habitat Categories (GHC) classification system", 2014, Ecol. Indic. 36, 290–300
33. A. Elatawneh, A. Wallner, I. Manakos, T. Schneider, T. Knoke, "Forest Cover Database Updates Using Multi-Seasonal RapidEye Data - Storm Event Assessment in the Bavarian Forest National Park", Forests 2014, 5, 1284-1303.
34. C.G. Karydas, M. Petriolis, I. Manakos, "Evaluating alternative methods of soil erodibility mapping in the Mediterranean island of Crete.", Special Issue 'Soil Erosion: A Major Threat to Food Production and the Environment', Journal of Agriculture, 2013, 3(3), Pages 362-380.
35. I. Manakos, "Remote Sensing in Europe: Status analysis and trends focusing on environment and agriculture", Journal of Aeronautics and Space Technologies, 2013, Vol.6, No. 1, Pages 1-5.
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Conference

1. P. Ribeiro, O. Reigners, T. Voirand, M. Delpey, A. Declerck, C. Pulido, I. Manakos, C. Kalogeropoulos, T. Habib, E. Tsiros, "MEDEOS - Earth Observation for land-based pollution assessment & monitoring in mediterranean coastal waters.", 2024 IEEE International Geoscience and Remote Sensing Symposium, 7-12 July 2024, Athens, Greece.
2. H. Linseisen, I. Manakos, E. Katsikis, A. Delopoulos, "Assimilation von satellitenbasierten Reflexionsmessungen in einem Informationssystem für einen modernen Hopfenbaubetrieb.", Referate der 44. GIL-Jahrestagung, "Informatik in der Land-, Forstund Ernährungswirtschaft", C. Hoffmann et al. (Hrsg.), GI-Edition "Lecture Notes in Informatics", 27-28 February 2024, Stuttgart-Hohenheim, Germany, pp. 323-327.
3. R. Chadoulis, M. Ruciński, E. Katsikis, P. Archicinski, S. Sala, E. Gromny, E. Wozniak, I. Manakos, A. Affek, A. Foks-Ryznar, "Phenological Metrics Derived From Sentinel-2 Data For Solidago Gigantea Mapping.", IGARSS 2023 - 2023 IEEE International Geoscience and Remote Sensing Symposium, 16-21 July 2023, Pasadena, CA, USA, pp. 445-447. DOI: 10.1109/IGARSS52108.2023.10282732
4. I. Manakos, E. Katsikis, S. Medinets, Y. Gazyetov, L. Alagialoglou, V. Medinets, "Identification of Emergent and Floating Aquatic Vegetation Using an Unsupervised Thresholding Approach: A Case Study of the Dniester Delta in Ukraine, 9th International Conference on Geographical Information Systems Theory.", Applications and Management, 25-27 April 2023, Prague, Czech Republic. DOI: 10.5220/0012024000003473
5. G. Scarpino, M. Matera, P. Bauer, I. Manakos, A. Kita, K. Vlachos, A. Bozas, I. Serral, A. Moumtzidou, I. Gialampoukidis, S. Vrochidis, "WQeMS Platform for Insland and Surface Water Bodies' Monitoring: Serving User Communities and Supporting Experts' Analyses.", In Proceedings of the Ninth International Conference on Remote Sensing and Geoinformation of Environmentʼ 3-5 April, 2023 – Cyprus. https://doi.org/10.1117/12.2680817
6. G. F. Angelis, A. Domi, A. Zamichos, M. Tsourma, I. Manakos, A. Drosou, D. Tzovaras, "A Comparative Study on Vision Transformers in Remote Sensing Building Extraction.", In Proc. of the 18th Int. Joint Conference on Computer Vision, Imaging & Computer Graphics Theory & Applications (VISIGRAPP2023), Vol. 3: IVAPP, pp. 222-229, 2023. DOI: 10.5220/0011787800003417
7. P. Archiciński, S. Sala, E. Katsikis, M. Ruciński, R. Chadoulis, A. Kita, E. Gromny, E. Woźniak, I. Manakos, "Correlation of the flooding regimewith the presence of solidago gigantea over the valley of Narew in Poland", 11-15 July 2022, Warsaw, pp. 140. IALE 2022 European Landscape Ecology Congress, making the future, learning from the past
8. M. Kanj, I. Manakos, I. Tsolakidis, N. Katselas, C. Kalaitzidis, "Empirical estimation of surface water quality parameters in Lake Kerkini using Landsat ETM+/OLI",Eighth International Conference on Enviromental Management, Engineering, Planning and Economics (CEMEPE) and SECOTOX Conference, July 20-24 2021, Thessaloniki, Greece, pp. 110-121.
9. L. Alagialoglou, I. Manakos, M. Heurich, J. Červenka, A. Delopoulos, "Canopy height estimation from spaceborne imagery using convolutional encoder-decoder", 27th International Conference on Multimedia Modeling, June 22-24 2021, Prague, Czech Republic, doi: 10.1007/978-3-030-67835-7_26
10. I. Manakos, A. Ledawi, A. Stergioudis, C. Kalaitzidis, "Assessment of Texture Features' Contribution in Discriminating Natural Bare Areas vs. Artificially Covered Ones: Chania Case Study",Proceedings of the EARSeL Joint Workshop 2021 EO for sustainable cities and communities, March 30 - April 1 2021, Liege, Belgium, pp. 126-127.
11. I. Manakos, M. Kanj, M. Sismanis, I. Tsolakidis, C. Kalaitzidis, "Multi-Temporal Inundated Areas Monitoring Made Easy: The Case of Kerkini Lake in Greece", 7th International Conference on Geographical Information Systems Theory, Applications and Management, April 23-25 2021, Prague, Czech Republic, doi:10.5220/0010555700480055
12. I. Soubry, I. Manakos, C. Kalaitzidis, "Recent Advances in Land Surface Phenology Estimation with Multispectral Sensing", 7th International Conference on Geographical Information Systems Theory, Applications and Management, April 23-25 2021, Prague, Czech Republic, doi: 10.5220/0010555801340145
13. R. Lucas, A. Mitchell, I. Manakos, P. Blonda, "The Earth Obsevation Data Ecosystem Monitoring (Eodesm) System", IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium, Valencia, 2018, 8985-8987, doi: 10.1109/IGARSS.2018.8519474
14. Z. Petrou, T. Stathaki, I. Manakos, M. Adamo, C. Tarantino, P. Blonda, "Land cover to habitat map conversion using remote sensing data: a supervised learning approach,", in: IEEE Int. Geoscience and Remote Sensing Symp., IEEE, Quebec City, 2014, pp. 4683–4686.
15. Z. Petrou, I. Manakos, T. Stathaki, C. Tarantino, M. Adamo, P. Blonda, "A vegetation height classification approach based on texture analysis of a single VHR image", Proceedings of the 35th International Symposium on Remote Sensing of Environment, 2014, IOP Conference Series: Earth and Environmental Science, 17, 012210 doi:10.1088/1755-1315/17/1/012210.
16. S. Mucher, L. Roupioz, H. Kramer, M. Wolters, M. Bogers, R. Lucas, P. Bunting, Z. Petrou, V. Kosmidou, I. Manakos, E. Padoa-Schioppa, G.F. Ficetola, A. Bonardi, M. Adamo, P. Blonda, "LIDAR as a valuable information source for habitat mapping", GI_Forum conference, 2-5 July 2013, Salzburg, Austria, pp. 520–523.
17. M. Adamo, C. Tarantino, V. Kosmidou, Z. Petrou, I. Manakos, V. Tomaselli, R. Lucas, S. Muncher, P. Blonda, "Disambiguation rules based on Earth Observation data for Land Cover to habitat map translation: a case study", GI_Forum conference, 2-5 July 2013, Salzburg, Austria, pp. 487–491.
18. M. Adamo, C. Tarantino, V. Kosmidou, Z. Petrou, I. Manakos, R. M. Lucas, V. Tomaselli, C. A. Mucher, P. Blonda, "Land cover to habitat map translation: Disambiguation rules based on Earth Observation data", in: IEEE Int. Geoscience and Remote Sensing Symp., IEEE, Melbourne, 2013. pp. 3817–3820.
19. P. Blonda, P. Dimopoulos, R. H. G. Jongman, C. A. Mucher, H. Nagendra, D. Iasillo, A. Arnaud, P. Mairota, J. P. Honrado, E. Padoa-Schioppa, R. Lucas, P. Bunting, L. Durieux, S. Bollanos, L. Candela, J. Inglada, I. Manakos, "The BIO_SOS European Initiative for Habitat Monitoring", 33rd EARSeL annual Symposium Proceedings, Matera, Italy, 2013, 911 - 920.
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Books Chapters

1. I. Soubry, I. Manakos, C. Kalaitzidis, "Progress on Land Surface Phenology Estimation with Multispectral Remote Sensing.", 2023, Communications in Computer and Information Science (1908), Editors: C. Grueau, R. Lauren, L. Ragia, Springer, ISBN 978-3-031-44111-0, pp. 16-37. https://doi.org/10.1007/978-3-031-44112-7
2. R. Lucas, P. Blonda, J. Bustamante, R. Diaz-Delgado, S. Giamberini, G. Kordelas, J. Goncalves, I. Manakos, M. Santoro, R. Sonnenschein, F. Weiser, L. Willm, R. Viterbi, "Enabling Earth Observation for Protected Areas", The ever growing use of Copernicus across Europe’s Regions - A selection of 99 user stories by local and regional authorities, 2018, Co-Production of the European Commission, the European Space Agency and the Network of European Regions Using Space Technologies, 120-121.
   http://www.nereus-regions.eu/wp-content/uploads/2017/10/PUBLICATION_Copernicus4regions_2018.pdf
3. C. Kalaitzidis, I. Manakos, "Приложение на дистанционните изследвания и геоинформационните технологии в земеделието - Application of remote sensing and geoinformation technologies in agriculture", in Наблюдение на Земята от Космоса: : Учебно помагало за самоподготовка в извънкласни дейности по природни науки/ Earth Observation from Space - Tutorial for individual work in extracurricular activities in natural sciences, 2018, L. Filchev Ed., Space Research and Technology Institute-Bulgarian Academy of Sciences, p. 190 (ISBN 978-619-7490-03-9/ eISBN 978-619-7490-04-6, DOI:10.3897/9786197490046) http://space.bas.bg/BG/magasin/Lecture_Notes_EEOBSS.pdf
4. I. Manakos, S. Lavender, "Remote Sensing in Support of Geo-Information in Europe", Land Use and Land Cover Mapping in Europe - practices & trends, Remote Sensing and Digital Image Processing Book Series, 2014, Springer Verlag, 18, 3-10.
5. I. Manakos, M. Braun, "Land Use & land cover mapping in Europe - practices and trends", Remote Sensing and Digital Image Processing Book Series, 2014, Springer Verlag, 18, p.441
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